RedisParam

DOI: 10.18129/B9.bioc.RedisParam    

This is the development version of RedisParam; to use it, please install the devel version of Bioconductor.

Provide a 'redis' back-end for BiocParallel

Bioconductor version: Development (3.16)

This package provides a Redis-based back-end for BiocParallel, enabling an alternative mechanism for distributed computation. The The 'manager' distributes tasks to a 'worker' pool through a central Redis server, rather than directly to workers as with other BiocParallel implementations. This means that the worker pool can change dynamically during job evaluation. All features of BiocParallel are supported, including reproducible random number streams, logging to the manager, and alternative 'load balancing' task distributions.

Author: Martin Morgan [aut, cre] , Jiefei Wang [aut]

Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>

Citation (from within R, enter citation("RedisParam")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RedisParam")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RedisParam")

 

HTML R Script RedisParam for Developers
HTML R Script Using RedisParam
PDF   Reference Manual
Text   NEWS
Text   INSTALL

Details

biocViews Infrastructure, Software
Version 0.99.0
In Bioconductor since BioC 3.16 (R-4.2)
License Artistic-2.0
Depends R (>= 4.2.0), BiocParallel(>= 1.29.12)
Imports methods, redux, withr, futile.logger
LinkingTo
Suggests rmarkdown, knitr, testthat, BiocStyle
SystemRequirements hiredis
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RedisParam_0.99.0.tar.gz
Windows Binary RedisParam_0.99.0.zip
macOS 10.13 (High Sierra) RedisParam_0.99.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RedisParam
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RedisParam
Package Short Url https://bioconductor.org/packages/RedisParam/
Package Downloads Report Download Stats

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