MsBackendMsp

DOI: 10.18129/B9.bioc.MsBackendMsp  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see MsBackendMsp.

Mass Spectrometry Data Backend for NIST msp Files

Bioconductor version: 3.16

Mass spectrometry (MS) data backend supporting import and handling of MS/MS spectra from NIST MSP Format (msp) files. Import of data from files with different MSP *flavours* is supported. Objects from this package add support for MSP files to Bioconductor's Spectra package. This package is thus not supposed to be used without the Spectra package that provides a complete infrastructure for MS data handling.

Author: Neumann Steffen [aut] , Johannes Rainer [aut, cre] , Michael Witting [ctb]

Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsBackendMsp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendMsp")

 

HTML	R Script	MsBackendMsp
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software
Version	1.2.0
In Bioconductor since	BioC 3.15 (R-4.2) (1 year)
License	Artistic-2.0
Depends	R (>= 4.1.0), Spectra(>= 1.5.14)
Imports	BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats
LinkingTo
Suggests	testthat, knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), rmarkdown
SystemRequirements
Enhances
URL	https://github.com/RforMassSpectrometry/MsBackendMsp
BugReports	https://github.com/RforMassSpectrometry/MsBackendMsp/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MsBackendMsp_1.2.0.tar.gz
Windows Binary	MsBackendMsp_1.2.0.zip
macOS Binary (x86_64)	MsBackendMsp_1.2.0.tgz
macOS Binary (arm64)	MsBackendMsp_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MsBackendMsp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MsBackendMsp
Bioc Package Browser	https://code.bioconductor.org/browse/MsBackendMsp/
Package Short Url	https://bioconductor.org/packages/MsBackendMsp/
Package Downloads Report	Download Stats