MPFE

DOI: 10.18129/B9.bioc.MPFE  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see MPFE.

Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

Bioconductor version: 3.16

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

Author: Peijie Lin, Sylvain Foret, Conrad Burden

Maintainer: Conrad Burden <conrad.burden at anu.edu.au>

Citation (from within R, enter citation("MPFE")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MPFE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MPFE")

 

PDF R Script MPFE
PDF   Reference Manual
Text   README

Details

biocViews DNAMethylation, HighThroughputSequencingData, MethylSeq, Software
Version 1.34.0
In Bioconductor since BioC 3.0 (R-3.1) (8.5 years)
License GPL (>= 3)
Depends
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MPFE_1.34.0.tar.gz
Windows Binary MPFE_1.34.0.zip
macOS Binary (x86_64) MPFE_1.34.0.tgz
macOS Binary (arm64) MPFE_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MPFE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MPFE
Bioc Package Browser https://code.bioconductor.org/browse/MPFE/
Package Short Url https://bioconductor.org/packages/MPFE/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: