CyTOFpower

DOI: 10.18129/B9.bioc.CyTOFpower  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see CyTOFpower.

Power analysis for CyTOF experiments

Bioconductor version: 3.16

This package is a tool to predict the power of CyTOF experiments in the context of differential state analyses. The package provides a shiny app with two options to predict the power of an experiment: i. generation of in-sicilico CyTOF data, using users input ii. browsing in a grid of parameters for which the power was already precomputed.

Author: Anne-Maud Ferreira [cre, aut] , Catherine Blish [aut], Susan Holmes [aut]

Maintainer: Anne-Maud Ferreira <anne-maud.ferreira at stanford.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CyTOFpower")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CyTOFpower")

 

HTML	R Script	Power analysis for CyTOF experiments
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBiology, FlowCytometry, SingleCell, Software, StatisticalMethod
Version	1.4.0
In Bioconductor since	BioC 3.14 (R-4.1) (1.5 years)
License	LGPL-3
Depends	R (>= 4.1)
Imports	CytoGLMM, diffcyt, DT, dplyr, ggplot2, magrittr, methods, rlang, stats, shiny, shinyFeedback, shinyjs, shinyMatrix, SummarizedExperiment, tibble, tidyr
LinkingTo
Suggests	testthat (>= 3.0.0), BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CyTOFpower_1.4.0.tar.gz
Windows Binary	CyTOFpower_1.4.0.zip
macOS Binary (x86_64)	CyTOFpower_1.4.0.tgz
macOS Binary (arm64)	CyTOFpower_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CyTOFpower
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CyTOFpower
Bioc Package Browser	https://code.bioconductor.org/browse/CyTOFpower/
Package Short Url	https://bioconductor.org/packages/CyTOFpower/
Package Downloads Report	Download Stats