CoverageView

DOI: 10.18129/B9.bioc.CoverageView  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see CoverageView.

Coverage visualization package for R

Bioconductor version: 3.16

This package provides a framework for the visualization of genome coverage profiles. It can be used for ChIP-seq experiments, but it can be also used for genome-wide nucleosome positioning experiments or other experiment types where it is important to have a framework in order to inspect how the coverage distributed across the genome

Author: Ernesto Lowy

Maintainer: Ernesto Lowy <ernestolowy at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CoverageView")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CoverageView")

 

PDF	R Script	Easy visualization of the read coverage
PDF		Reference Manual

Details

biocViews	ChIPSeq, ImmunoOncology, RNASeq, Sequencing, Software, Technology, Visualization
Version	1.36.0
In Bioconductor since	BioC 2.14 (R-3.1) (9 years)
License	Artistic-2.0
Depends	R (>= 2.10), methods, Rsamtools(>= 1.19.17), rtracklayer
Imports	S4Vectors(>= 0.7.21), IRanges(>= 2.3.23), GenomicRanges, GenomicAlignments, parallel, tools
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CoverageView_1.36.0.tar.gz
Windows Binary
macOS Binary (x86_64)	CoverageView_1.36.0.tgz
macOS Binary (arm64)	CoverageView_1.36.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CoverageView
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CoverageView
Bioc Package Browser	https://code.bioconductor.org/browse/CoverageView/
Package Short Url	https://bioconductor.org/packages/CoverageView/
Package Downloads Report	Download Stats