CTDquerier

DOI: 10.18129/B9.bioc.CTDquerier  

This package is for version 3.16 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CTDquerier.

Package for CTDbase data query, visualization and downstream analysis

Bioconductor version: 3.16

Package to retrieve and visualize data from the Comparative Toxicogenomics Database (http://ctdbase.org/). The downloaded data is formated as DataFrames for further downstream analyses.

Author: Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut], Xavier EscribĂ -Montagut [cre]

Maintainer: Xavier EscribĂ -Montagut <xavier.escriba at isglobal.org>

Citation (from within R, enter citation("CTDquerier")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CTDquerier")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual
Text   LICENSE

Details

biocViews BiomedicalInformatics, DataImport, DataRepresentation, GO, GeneSetEnrichment, Infrastructure, KEGG, Network, NetworkEnrichment, Pathways, Software
Version 2.6.0
In Bioconductor since BioC 3.7 (R-3.5) (5 years)
License MIT + file LICENSE
Depends R (>= 4.1)
Imports RCurl, stringr, S4Vectors, stringdist, ggplot2, igraph, utils, grid, gridExtra, methods, stats, BiocFileCache
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CTDquerier_2.6.0.tar.gz
Windows Binary CTDquerier_2.6.0.zip
macOS Binary (x86_64) CTDquerier_2.6.0.tgz
macOS Binary (arm64) CTDquerier_2.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CTDquerier
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CTDquerier
Bioc Package Browser https://code.bioconductor.org/browse/CTDquerier/
Package Short Url https://bioconductor.org/packages/CTDquerier/
Package Downloads Report Download Stats

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