CHRONOS

DOI: 10.18129/B9.bioc.CHRONOS  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see CHRONOS.

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Bioconductor version: 3.16

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

Author: Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos

Maintainer: Panos Balomenos <balomenos at upatras.gr>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CHRONOS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CHRONOS")

 

PDF	R Script	CHRONOS
PDF		Reference Manual
Text		NEWS

Details

biocViews	GraphAndNetwork, KEGG, Pathways, Software, SystemsBiology
Version	1.26.0
In Bioconductor since	BioC 3.3 (R-3.3) (7 years)
License	GPL-2
Depends	R (>= 3.5)
Imports	XML, RCurl, RBGL, parallel, foreach, doParallel, openxlsx, igraph, circlize, graph, stats, utils, grDevices, graphics, methods, biomaRt, rJava
LinkingTo
Suggests	RUnit, BiocGenerics, knitr, rmarkdown
SystemRequirements	Java version >= 1.7, Pandoc
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CHRONOS_1.26.0.tar.gz
Windows Binary	CHRONOS_1.26.0.zip
macOS Binary (x86_64)	CHRONOS_1.26.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/CHRONOS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CHRONOS
Bioc Package Browser	https://code.bioconductor.org/browse/CHRONOS/
Package Short Url	https://bioconductor.org/packages/CHRONOS/
Package Downloads Report	Download Stats