BiocCheck

DOI: 10.18129/B9.bioc.BiocCheck    

This is the development version of BiocCheck; for the stable release version, see BiocCheck.

Bioconductor-specific package checks

Bioconductor version: Development (3.16)

BiocCheck guides maintainers through Bioconductor best practicies. It runs Bioconductor-specific package checks by searching through package code, examples, and vignettes. Maintainers are required to address all errors, warnings, and most notes produced.

Author: Bioconductor Package Maintainer [aut, cre], Lori Shepherd [aut], Daniel von Twisk [ctb], Kevin Rue [ctb], Marcel Ramos [ctb], Leonardo Collado-Torres [ctb], Federico Marini [ctb]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BiocCheck")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BiocCheck")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocCheck")

 

HTML R Script BiocCheck: Ensuring Bioconductor package guidelines
PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Software
Version 1.33.18
In Bioconductor since BioC 2.14 (R-3.1) (8.5 years)
License Artistic-2.0
Depends R (>= 4.2.0)
Imports biocViews(>= 1.33.7), BiocManager, stringdist, graph, httr, tools, codetools, methods, utils, knitr
LinkingTo
Suggests RUnit, BiocGenerics, Biobase, jsonlite, rmarkdown, downloader, devtools (>= 1.4.1), usethis, BiocStyle, callr
SystemRequirements
Enhances codetoolsBioC
URL https://github.com/Bioconductor/BiocCheck
BugReports https://github.com/Bioconductor/BiocCheck/issues
Depends On Me
Imports Me AnnotationHubData
Suggests Me GEOfastq, HMP16SData, HMP2Data, packFinder, preciseTAD, scpdata, SpectralTAD
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocCheck_1.33.18.tar.gz
Windows Binary BiocCheck_1.33.18.zip
macOS Binary (x86_64) BiocCheck_1.33.18.tgz
macOS Binary (arm64) BiocCheck_1.33.18.tgz
Source Repository git clone https://git.bioconductor.org/packages/BiocCheck
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocCheck
Package Short Url https://bioconductor.org/packages/BiocCheck/
Package Downloads Report Download Stats

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