ANF

DOI: 10.18129/B9.bioc.ANF  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ANF.

Affinity Network Fusion for Complex Patient Clustering

Bioconductor version: 3.16

This package is used for complex patient clustering by integrating multi-omic data through affinity network fusion.

Author: Tianle Ma, Aidong Zhang

Maintainer: Tianle Ma <tianlema at buffalo.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ANF")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ANF")

 

HTML	R Script	Cancer Patient Clustering with ANF
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, GraphAndNetwork, Network, Software
Version	1.20.0
In Bioconductor since	BioC 3.6 (R-3.4) (5.5 years)
License	GPL-3
Depends
Imports	igraph, Biobase, survival, MASS, stats, RColorBrewer
LinkingTo
Suggests	ExperimentHub, SNFtool, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	HarmonizedTCGAData
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ANF_1.20.0.tar.gz
Windows Binary	ANF_1.20.0.zip
macOS Binary (x86_64)	ANF_1.20.0.tgz
macOS Binary (arm64)	ANF_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ANF
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ANF
Bioc Package Browser	https://code.bioconductor.org/browse/ANF/
Package Short Url	https://bioconductor.org/packages/ANF/
Package Downloads Report	Download Stats