1 Introduction

This document explains the functionalities available in the a4Reporting package.

This package contains utility functions to enhance reporting of data for the Automated Affymetrix Array Analysis suite of packages.

2 Create an annotation table

The annotationTable function enhances the reporting of table of genes or gene ontology term.

3 Top table of classification objects

A few utility functions to enhances the reporting of top tables for glmnet, lognet, elnet, pam and pam classification confusion are available.

4 Appendix

4.1 Session information

## R version 4.2.1 (2022-06-23 ucrt)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows Server x64 (build 20348)
## 
## Matrix products: default
## 
## locale:
## [1] LC_COLLATE=C                          
## [2] LC_CTYPE=English_United States.utf8   
## [3] LC_MONETARY=English_United States.utf8
## [4] LC_NUMERIC=C                          
## [5] LC_TIME=English_United States.utf8    
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] a4Reporting_1.46.0
## 
## loaded via a namespace (and not attached):
##  [1] digest_0.6.30   R6_2.5.1        xtable_1.8-4    jsonlite_1.8.3 
##  [5] magrittr_2.0.3  evaluate_0.17   stringi_1.7.8   rlang_1.0.6    
##  [9] cachem_1.0.6    cli_3.4.1       jquerylib_0.1.4 bslib_0.4.0    
## [13] rmarkdown_2.17  tools_4.2.1     stringr_1.4.1   xfun_0.34      
## [17] yaml_2.3.6      fastmap_1.1.0   compiler_4.2.1  htmltools_0.5.3
## [21] knitr_1.40      sass_0.4.2