msgbsR: methylation sensitive genotyping by sequencing (MS-GBS)
R functions
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Documentation for package ‘msgbsR’ version 1.22.0
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| msgbsR-package | msgbsR |
| checkCuts | checkCuts |
| cuts | A GRanges object of differentially methylated MspI cut sites on chromosome 20 in Rat from a MS-GBS experiment. |
| diffMeth | diffMeth |
| msgbsR | msgbsR |
| plotCircos | plotCircos |
| plotCounts | plotCounts |
| ratdata | Read counts of potential MspI cut sites from a MS-GBS experiment of prostates from rats |
| ratdata2 | Read counts of correct MspI cut sites from a MS-GBS experiment of prostates from rats |
| rawCounts | rawCounts |