Microbiome Data Simulation

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Documentation for package ‘miaSim’ version 1.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

convertToSE	SummarizedExperiment('SE') or 'TreeSE' construction function
powerlawA	Interaction matrix with Power-Law network adjacency matrix
randomA	Generate random uniform interaction matrix
randomE	Generate random efficiency matrix
simulateConsumerResource	Consumer-resource model simulation
simulateGLV	Generalized Lotka-Volterra (gLV) simulation
simulateHubbell	Hubbell's neutral model simulation
simulateHubbellRates	Hubbell's neutral model simulation applied to time series
simulateRicker	Generate time series with the Ricker model
simulateSOI	Self-Organised Instability model (SOI) simulation
simulateStochasticLogistic	Stochastic Logistic simulation