consensus Independent Component Analysis
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Documentation for package ‘consICA’ version 1.0.0
Help Pages
| consICA | Calculate consensus Independent Component Analysis |
| enrichGO | Enrichment analysis of GO-terms based on Ensembl IDs |
| estimateVarianceExplained | Estimate the variance explained by the model |
| getFeatures | Get features from consICA deconvolution result |
| getGO | Assigns IC signatures to Gene Ontologies |
| get_score | Create score depending on threshold and paradigm |
| is.consICA | Is the object is consensus ICA compliant? |
| oneICA | Runs 'fastICA' |
| plotICVarianceExplained | Barplot variance explained by each IC |
| samples_data | Samples of gene expression |
| saveReport | Save PDF report with analysis of each independent component |
| set_bpparam | Set up for the parallel computing for biocParallel Adapt from 'FEAST' This function sets up the environment for parallel computing. |
| sortDataFrame | Sort dataframe |
| sortFeatures | Sort Genes of consICA object |
| survivalAnalysis | Survival analysis based on significant IC |