ccfindR-package	ccfindR
assignCelltype	assignCelltype
basis	basis
basis,scNMFSet-method	basis-scNMFSet-method
basis<-	basis-set
basis<-,scNMFSet-method	basis-set-scNMFSet-method
build_tree	build_tree
ccfindR	ccfindR
cell_map	cell_map
cluster_id	cluster_id
coeff	coeff
coeff,scNMFSet-method	coeff-scNMFSet-method
coeff<-	coeff-set
coeff<-,scNMFSet-method	coeff-set-scNMFSet-method
colData,scNMFSet-method	colData-scNMFSet-method
colData<-,scNMFSet,ANY-method	colData-set-scNMFSet-ANY-method
counts,scNMFSet-method	counts-scNMFSet-method
counts<-,scNMFSet-method	counts-set-scNMFSet-method
dbasis	dbasis
dbasis,scNMFSet-method	dbasis-scNMFSet-method
dbasis<-	dbasis-set
dbasis<-,scNMFSet-method	dbasis-set-scNMFSet-method
dcoeff	dcoeff
dcoeff,scNMFSet-method	dcoeff-scNMFSet-method
dcoeff<-	dcoeff-set
dcoeff<-,scNMFSet-method	dcoeff-set-scNMFSet-method
factorize	factorize
feature_map	feature_map
filter_cells	filter_cells
filter_genes	filter_genes
gene_map	gene_map
measure	measure
measure,scNMFSet-method	measure-scNMFSet-method
measure<-	measure-set
measure<-,scNMFSet-method	measure-set-scNMFSet-method
meta_gene.cv	meta_gene.cv
meta_genes	meta_genes
newick	newick
normalize_count	normalize_count
optimal_rank	optimal_rank
plot,scNMFSet,ANY-method	scNMFSet-class
plot_genes	plot_genes
plot_tree	plot_tree
ranks	ranks
ranks,scNMFSet-method	ranks-scNMFSet-method
ranks<-	ranks-set
ranks<-,scNMFSet-method	ranks-set-scNMFSet-method
read_10x	read_10x
remove_zeros	remove_zeros
rename_tips	rename_tips
rowData,scNMFSet-method	rowData-scNMFSet-method
rowData<-,scNMFSet-method	rowData-set-scNMFSet-method
scNMFSet	scNMFSet
scNMFSet-class	scNMFSet-class
show,scNMFSet-method	show-scNMFSet-method
simulate_data	simulate_data
simulate_whx	simulate_whx
vb_factorize	vb_factorize
visualize_clusters	visualize_clusters
write_10x	write_10x
write_meta	write_meta
[,scNMFSet,ANY,ANY,ANY-method	subset-methods
[,scNMFSet-method	subset-methods
