TADCompare: Identification and characterization of differential TADs

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Documentation for package ‘TADCompare’ version 1.8.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

ConsensusTADs	Consensus boundary identification
DiffPlot	Visualization of differential TAD boundaries
GM12878.40kb.raw.chr2	A subset of chomosome 2 contact matrix, GM12878 cell line.
IMR90.40kb.raw.chr2	A subset of chomosome 2 contact matrix, IMR90 cell line.
rao_chr22_prim	Chromosome 22 combined intrachromosomal primary contact matrix from Rao et al. 2014.
rao_chr22_rep	Chromosome 22 combined intrachromosomal replicate contact matrix from Rao et al. 2014.
TADCompare	Differential TAD boundary detection
TimeCompare	Time-varying TAD boundary analysis
time_mats	Chromosome 22 time-varying contact matrices from Rao et al. 2017.