Gene regulator enrichment analysis

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Documentation for package ‘RegEnrich’ version 1.8.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

DeaSet-class	DeaSet class
dim-method	dimention of 'TopNetwork' object
Enrich-class	Enrich class
getResultsNames	Inference the name of results of DESeq analysis by a formula (or model matrix) and sample information
head-method	head or tail of Score object
Lyme_GSE63085	Example RNAseq dataset [Human]
newDeaSet	DeaSet object creator
newScore	Score class
newTopNetwork	TopNetwork object creator
plotOrders	Compare the orders of two vectors
plotRegTarExpr	Plot regulator and its targets expression
plotSoftPower	Plot soft power for WGCNA analysis
plot_Enrich	Plot results of FET/GSEA enrichment analysis
plot_Enrich-method	Plot results of FET/GSEA enrichment analysis
print.Score	Print Score object
RegenrichSet	RegenrichSet object creator
RegenrichSet-class	RegenrichSet class
regenrich_diffExpr	Differential expression analysis step
regenrich_diffExpr-method	Differential expression analysis step
regenrich_enrich	Enrichment analysis step
regenrich_enrich-method	Enrichment analysis step
regenrich_network	Regulator-target network inference step
regenrich_network-method	Regulator-target network inference step
regenrich_network<-	Regulator-target network inference step
regenrich_network<--method	Regulator-target network inference step
regenrich_rankScore	Regulator scoring and ranking
regenrich_rankScore-method	Regulator scoring and ranking
results_DEA	Result accessor functions
results_enrich	Result accessor functions
results_expr	Result accessor functions
results_score	Result accessor functions
results_topNet	Result accessor functions
Score-class	Score class
show-method	methods of generic function "show"
tail-method	head or tail of Score object
TFs	Human gene regulators
TopNetwork-class	TopNetwork class