The Cancer Genome Atlas Data Integration

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Documentation for package ‘RTCGA’ version 1.28.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

RTCGA-package	The Caner Genome Atlas data integration
boxplotTCGA	Create Boxplots for TCGA Datasets
checkTCGA	Information About Datasets from TCGA Project
convertPANCAN12	Convert Data from RTCGA Family to Bioconductor Classes
convertTCGA	Convert Data from RTCGA Family to Bioconductor Classes
datasetsTCGA	RTCGA - The Family of R Packages with Data from The Cancer Genome Atlas Study
downloadTCGA	Download TCGA Data
expressionsTCGA	Gather Expressions for TCGA Datasets
heatmapTCGA	Create Heatmaps for TCGA Datasets
infoTCGA	Information About Cohorts from TCGA Project
installTCGA	Install Data Packages from RTCGA Family
kmTCGA	Plot Kaplan-Meier Estimates of Survival Curves for Survival Data
mutationsTCGA	Gather Mutations for TCGA Datasets
pcaTCGA	Plot Two Main Components of Principal Component Analysis
readTCGA	Read TCGA data to the tidy Format
RTCGA	The Caner Genome Atlas data integration
RTCGA.data	RTCGA - The Family of R Packages with Data from The Cancer Genome Atlas Study
survivalTCGA	Extract Survival Information from Datasets Included in RTCGA.clinical and RTCGA.clinical.20160128 Packages
theme_RTCGA	RTCGA Theme for ggplot2