A fast hierarchical graph-based clustering method

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Documentation for package ‘HGC’ version 1.6.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

CKNN.Construction	Building Unweighted Continuous K Nearest Neighbor Graph
FindClusteringTree	The HGC algorithm embedded in Seurat pipeline
HGC.dendrogram	Hierarchical Graph-based Clustering
HGC.parameter	Recording the Parameters of the Graph-based Hierarchical Clustering
HGC.PlotARIs	Calculating and Visualizing ARIs of the clustering results with given labels
HGC.PlotDendrogram	Visualizing the dendrogram
HGC.PlotParameter	Visualizing the Parameter Records during Clustering
KNN.Construction	Building Unweighted K Nearest Neighbor Graph
MST.Construction	Building Unweighted Minimum Spanning Tree Graph
PMST.Construction	Building Unweighted Perturbed Minimum Spanning Tree Graph
Pollen	Embeddings of the Pollen datasets in the principal component space.
RNN.Construction	Building Unweighted epsilon Nearest Neighbor Graph
SNN.Construction	Building Unweighted Shared Nearest Neighbor Graph