A fast hierarchical graph-based clustering method


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Documentation for package ‘HGC’ version 1.6.0

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CKNN.Construction Building Unweighted Continuous K Nearest Neighbor Graph
FindClusteringTree The HGC algorithm embedded in Seurat pipeline
HGC.dendrogram Hierarchical Graph-based Clustering
HGC.parameter Recording the Parameters of the Graph-based Hierarchical Clustering
HGC.PlotARIs Calculating and Visualizing ARIs of the clustering results with given labels
HGC.PlotDendrogram Visualizing the dendrogram
HGC.PlotParameter Visualizing the Parameter Records during Clustering
KNN.Construction Building Unweighted K Nearest Neighbor Graph
MST.Construction Building Unweighted Minimum Spanning Tree Graph
PMST.Construction Building Unweighted Perturbed Minimum Spanning Tree Graph
Pollen Embeddings of the Pollen datasets in the principal component space.
RNN.Construction Building Unweighted epsilon Nearest Neighbor Graph
SNN.Construction Building Unweighted Shared Nearest Neighbor Graph