Brain Span Atlas in Biobase Expressionset R toolset

---

Documentation for package ‘BrainSABER’ version 1.8.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

.CellScabbard	The CellScabbard class
AIBSARNAid	Methods for the CellScabbard class
AIBSARNAid<-	Methods for the CellScabbard class
buildAIBSARNA	Function to create a SummarizedExperiment containing BrainSpan Data
CellScabbard	The CellScabbard class
CellScabbard-class	The CellScabbard class
CellScabbard-method	Methods for the CellScabbard class
CellScabbard-methods	Methods for the CellScabbard class
dataSetId	Methods for the CellScabbard class
dataSetId<-	Methods for the CellScabbard class
getExampleVector	Get an example vector for specified genes
getExternalVector	getExternalVector
getRelevantGenes	Get a subset of AIBSARNA using a Gene Expression Vector
getSimDataFrame	Get Age, Structure Acronym, and Similarity Scores Data Frame
getSimMatrix	Get Age, Structure Acronym, and Similarity Score Matrix
getSimScores	Get Similarity Scoring for a Gene Expression Vector
getTrimmedExternalSet	Get a trimmed version of an external data set
getUNDmatrix	getUNDmatrix
relevantGenes	Methods for the CellScabbard class
relevantGenes<-	Methods for the CellScabbard class
runShinyBrainSABER	ShinyBrainSABER
similarityDFs	Methods for the CellScabbard class
similarityDFs<-	Methods for the CellScabbard class
similarityMatrices	Methods for the CellScabbard class
similarityMatrices<-	Methods for the CellScabbard class
similarityScores	Methods for the CellScabbard class
similarityScores<-	Methods for the CellScabbard class
UNDmatrices	Methods for the CellScabbard class
UNDmatrices<-	Methods for the CellScabbard class