Biological Network Analysis


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Documentation for package ‘BioNetStat’ version 1.18.0

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adjacencyMatrix Adjacency matrix
averageBetweennessCentrality Network features
averageBetweennessEdgesCentrality Network features
averageClosenessCentrality Network features
averageClusteringCoefficient Network features
averageDegreeCentrality Network features
averageEigenvectorCentrality Network features
averageShortestPath Network features
betweennessCentrality Node scores
betweennessCentralityTest Network equality test
betweennessCentralityVertexTest Node score equality test
betweennessEdgesCentrality Node scores
centralityPathPlot Structural measures of vertices view in metabolic pathways
closenessCentrality Node scores
closenessCentralityTest Network equality test
closenessCentralityVertexTest Node score equality test
clusteringCoefficient Node scores
clusteringCoefficientTest Network equality test
clusteringCoefficientVertexTest Node score equality test
degreeCentrality Node scores
degreeCentralityTest Network equality test
degreeCentralityVertexTest Node score equality test
degreeDistributionTest Network equality test
diffNetAnalysis Differential network analysis method
doLabels Class vector of data table
edgeBetweennessEdgeTest Edge score equality test
edgeBetweennessTest Network equality test
edgeTest Edge score equality test
eigenvectorCentrality Node scores
eigenvectorCentralityTest Network equality test
eigenvectorCentralityVertexTest Node score equality test
KLdegree Kullback-Liebler divergence among the density functions of the degrees of two or more graphs
KLspectrum Kullback-Liebler divergence among the spectral density functions of two or more graphs
labels Labels of glioma tissues in gene expression
nDegreeDensities Density functions of the degrees of n graphs
networkFeature Network features
networkTest Network equality test
nodeScores Node scores
nodeTest Node score equality test
nSpectralDensities Spectral Density functions of n graphs
pathPlot Variable values view in metabolic pathways
readSetFile Read a collection of variables sets (*.txt)
readVarFile Read variable values matrix
runBioNetStat Run BNS
spectralDistributionTest Network equality test
spectralEntropies Network features
spectralEntropyTest Network equality test
varFile Gene expression in glioma tissues