Brings SingleCellExperiment to the Tidyverse


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Documentation for package ‘tidySingleCellExperiment’ version 1.8.0

Help Pages

add_count Count observations by group
add_count.default Count observations by group
add_count.SingleCellExperiment Count observations by group
as_tibble Coerce lists, matrices, and more to data frames
bind Efficiently bind multiple data frames by row and column
cell_type_df Cell types of 80 PBMC single cells
count Count observations by group
extract Extract a character column into multiple columns using regular expression groups
extract.SingleCellExperiment Extract a character column into multiple columns using regular expression groups
ggplot Create a new ggplot from a tidySingleCellExperiment object
glimpse Coerce lists, matrices, and more to data frames
join_features Extract and join information for features.
join_features-method Extract and join information for features.
join_transcripts (DEPRECATED) Extract and join information for transcripts.
nest nest
pbmc_small pbmc_small
pbmc_small_nested_interactions Intercellular ligand-receptor interactions for 38 ligands from a single cell RNA-seq cluster.
pivot_longer Pivot data from wide to long
plot_ly Initiate a plotly visualization
print Printing tibbles
print.SingleCellExperiment Printing tibbles
separate Separate a character column into multiple columns with a regular expression or numeric locations
tidy tidy for SingleCellExperiment
unite Unite multiple columns into one by pasting strings together
unnest unnest
unnest.tidySingleCellExperiment_nested unnest
unnest_single_cell_experiment unnest