openPrimeR-package | Multiplex PCR Primer Design and Analysis. |
adjust_binding_regions | Template Functionalities. |
AnalysisStats | Primer Analysis Statistics. |
assign_binding_regions | Template Functionalities. |
check_constraints | Primer Evaluation. |
check_restriction_sites | Primer Evaluation. |
classify_design_problem | Primer Design Functionalities. |
conOptions | Settings Functionalities. |
conOptions-method | Settings Functionalities. |
conOptions<- | Settings Functionalities. |
conOptions<--method | Settings Functionalities. |
constraintLimits | Settings Functionalities. |
constraintLimits-method | Settings Functionalities. |
constraintLimits<- | Settings Functionalities. |
constraintLimits<--method | Settings Functionalities. |
ConstraintOptions | Settings Functionalities. |
ConstraintOptions-class | Settings Functionalities. |
constraints | Settings Functionalities. |
constraints-method | Settings Functionalities. |
constraints<- | Settings Functionalities. |
constraints<--method | Settings Functionalities. |
ConstraintSettings | Settings Functionalities. |
ConstraintSettings-class | Settings Functionalities. |
CoverageConstraints | Settings Functionalities. |
CoverageConstraints-class | Settings Functionalities. |
create_coverage_xls | Output Functionalities. |
create_report | Output Functionalities. |
cvg_constraints | Settings Functionalities. |
cvg_constraints-method | Settings Functionalities. |
cvg_constraints<- | Settings Functionalities. |
cvg_constraints<--method | Settings Functionalities. |
Data | Data Sets. |
DesignSettings | Settings Functionalities. |
DesignSettings-class | Settings Functionalities. |
design_primers | Primer Design Functionalities. |
feature.matrix | Data Sets. |
filter_primers | Primer Evaluation. |
get_comparison_table | Primer Analysis Statistics. |
get_cvg_ratio | Primer Analysis Statistics. |
get_cvg_stats | Primer Analysis Statistics. |
get_cvg_stats_primer | Primer Analysis Statistics. |
get_initial_primers | Primer Design Functionalities. |
Input | Input Functionalities. |
openPrimeR | Multiplex PCR Primer Design and Analysis. |
Output | Output Functionalities. |
parallel_setup | Settings Functionalities. |
PCR | Settings Functionalities. |
PCR-method | Settings Functionalities. |
PCR<- | Settings Functionalities. |
PCR<--method | Settings Functionalities. |
PCR_Conditions | Settings Functionalities. |
PCR_Conditions-class | Settings Functionalities. |
Plots | Plotting Functions. |
plot_conservation | Plotting Functions. |
plot_constraint | Plotting Functions. |
plot_constraint_deviation | Plotting Functions. |
plot_constraint_fulfillment | Plotting Functions. |
plot_cvg_constraints | Plotting Functions. |
plot_cvg_vs_set_size | Plotting Functions. |
plot_penalty_vs_set_size | Plotting Functions. |
plot_primer | Plotting Functions. |
plot_primer_binding_regions | Plotting Functions. |
plot_primer_cvg | Plotting Functions. |
plot_primer_subsets | Plotting Functions. |
plot_template_cvg | Plotting Functions. |
primer.data | Data Sets. |
primer.df | Data Sets. |
PrimerDesign | Primer Design Functionalities. |
PrimerEval | Primer Evaluation. |
Primers | Input Functionalities. |
Primers-class | Input Functionalities. |
primer_significance | Primer Evaluation. |
read_primers | Input Functionalities. |
read_settings | Input Functionalities. |
read_templates | Input Functionalities. |
ref.data | Data Sets. |
RefCoverage | Data Sets. |
runTutorial | The openPrimeR Tutorial. |
score_conservation | Scoring Functions. |
score_degen | Scoring Functions. |
score_primers | Scoring Functions. |
Scoring | Scoring Functions. |
select_regions_by_conservation | Template Functionalities. |
Settings | Settings Functionalities. |
settings | Data Sets. |
subset_primer_set | Primer Evaluation. |
template.data | Data Sets. |
template.df | Data Sets. |
Templates | Input Functionalities. |
Templates-class | Input Functionalities. |
TemplatesFunctions | Template Functionalities. |
Tiller | Data Sets. |
tiller.primer.df | Data Sets. |
tiller.settings | Data Sets. |
tiller.template.df | Data Sets. |
update_template_cvg | Template Functionalities. |
write_primers | Output Functionalities. |
write_settings | Output Functionalities. |
write_templates | Output Functionalities. |