checkClocks | Check wheter input data contains the required CpGs for the implemented clocks. |
checkClocksGA | Check wheter input data contains the required CpGs for the implemented clocks for Gestational Age. |
commonClockCpgs | Get common CpGs |
DNAmAge | DNAm age estimation using different DNA methylation clocks. |
DNAmGA | Gestational DNAm age estimation using different DNA methylation clocks. |
getCellTypeReference | Get cell type reference |
load_DNAmGA_Clocks_data | Loads DNAmGA clock data from methylclockData |
load_DNAm_Clocks_data | Loads DNAm clock data from methylclockData |
meffilEstimateCellCountsFromBetas | Estimate cell counts for a beta matrix from a reference |
meffilListCellTypeReferences | List of available cell type references |
methylclock | methylclock |
plotCorClocks | Plot correlation among DNAm clockx |
plotDNAmAge | Plot DNAm age estimation vs chronological age. |
progress_data | PROGRESS cohor data |
progress_vars | PROGRESS cohort variables |