forget_gemma_memoised | Clear gemma.R cache |
gemma.R | gemma.R package: Access curated gene expression data and differential expression analyses |
gemma_call | Custom gemma call |
get_datasets_by_ids | Retrieve datasets by their identifiers |
get_dataset_annotations | Retrieve the annotations analysis of a dataset |
get_dataset_design | Retrieve the design of a dataset |
get_dataset_differential_expression_analyses | Retrieve the differential analyses of a dataset |
get_dataset_expression | Retrieve the expression data of a dataset |
get_dataset_object | Compile gene expression data and metadata |
get_dataset_platforms | Retrieve the platform of a dataset |
get_dataset_samples | Retrieve the samples of a dataset |
get_differential_expression_values | Retrieve differential expression results |
get_genes | Retrieve genes matching a gene identifier |
get_gene_go_terms | Retrieve the GO terms associated to a gene |
get_gene_locations | Retrieve the physical locations of a given gene |
get_gene_probes | Retrieve the probes associated to a genes |
get_platforms_by_ids | Retrieve all platforms matching a set of platform identifiers |
get_platform_annotations | Retrieve Platform Annotations by Gemma |
get_platform_datasets | Retrieve all experiments within a given platform |
get_platform_element_genes | Retrieve the genes associated to a probe in a given platform |
get_taxa | Get taxa |
get_taxon_datasets | Retrieve the datasets for a given taxon |
search_annotations | Search for annotation tags |
search_datasets | Retrieve datasets associated to an annotation tags search |
search_gemma | Search everything in Gemma. |
set_gemma_user | Authentication by user name |