cnvGSA-package | Gene-set Analysis of (Rare) Copy Number Variants |
cnvData.ls | Class '"CnvGSAInput"' |
cnvData.ls-method | Class '"CnvGSAInput"' |
cnvData.ls<- | Class '"CnvGSAInput"' |
cnvData.ls<--method | Class '"CnvGSAInput"' |
cnvGSA | Gene-set Analysis of (Rare) Copy Number Variants |
cnvGSAgsTables | Creates the gene-set tables for each gene-set. |
cnvGSAIn | Creating the input S4 object needed to run the script. |
CnvGSAInput | Class '"CnvGSAInput"' |
CnvGSAInput-class | Class '"CnvGSAInput"' |
cnvGSAlogRegTest | Performing the logistic regression tests on the CNV data. |
CnvGSAOutput | Class '"CnvGSAOutput"' |
CnvGSAOutput-class | Class '"CnvGSAOutput"' |
config.ls | Class '"CnvGSAInput"' |
config.ls-method | Class '"CnvGSAInput"' |
config.ls<- | Class '"CnvGSAInput"' |
config.ls<--method | Class '"CnvGSAInput"' |
f.enrFiles | Prepares the files for the enrichment maps. |
f.makeViz | Creates the plots from the CnvGSAOutput data. |
f.readConfig | Reading in the config file. |
geneID.ls | Class '"CnvGSAInput"' |
geneID.ls-method | Class '"CnvGSAInput"' |
geneID.ls<- | Class '"CnvGSAInput"' |
geneID.ls<--method | Class '"CnvGSAInput"' |
gsData.ls | Class '"CnvGSAInput"' |
gsData.ls-method | Class '"CnvGSAInput"' |
gsData.ls-method | Class '"CnvGSAOutput"' |
gsData.ls<- | Class '"CnvGSAInput"' |
gsData.ls<--method | Class '"CnvGSAInput"' |
gsTables.ls | Class '"CnvGSAOutput"' |
gsTables.ls-method | Class '"CnvGSAOutput"' |
params.ls | Class '"CnvGSAInput"' |
params.ls-method | Class '"CnvGSAInput"' |
params.ls<- | Class '"CnvGSAInput"' |
params.ls<--method | Class '"CnvGSAInput"' |
phData.ls | Class '"CnvGSAInput"' |
phData.ls-method | Class '"CnvGSAInput"' |
phData.ls-method | Class '"CnvGSAOutput"' |
phData.ls<- | Class '"CnvGSAInput"' |
phData.ls<--method | Class '"CnvGSAInput"' |
res.ls | Class '"CnvGSAOutput"' |
res.ls-method | Class '"CnvGSAOutput"' |