Bump Hunter


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Documentation for package ‘bumphunter’ version 1.40.0

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annotateNearest Annotate the results of nearest
annotateTranscripts Annotate transcripts
boundedClusterMaker Make clusters of genomic locations based on distance
bumphunter Bumphunter
bumphunter-method Bumphunter
bumphunter-methods Bumphunter
bumphunterEngine Bumphunter
clusterMaker Make clusters of genomic locations based on distance
dummyData Generate dummy data for use with bumphunter functions
getSegments Segment a vector into positive, zero, and negative regions
locfitByCluster Apply local regression smoothing to values within each spatially-defined cluster.
loessByCluster Apply loess smoothing to values within each spatially-defined cluster.
matchGenes Find and annotate closest genes to genomic regions
print.bumps Bumphunter
regionFinder Find non-zero regions in vector
runmedByCluster Apply running median smoothing to values within each spatially-defined cluster
smoother Smooth genomic profiles
TT Example data