1 Introduction

This document explains the functionalities available in the a4Reporting package.

This package contains utility functions to enhance reporting of data for the Automated Affymetrix Array Analysis suite of packages.

2 Create an annotation table

The annotationTable function enhances the reporting of table of genes or gene ontology term.

3 Top table of classification objects

A few utility functions to enhances the reporting of top tables for glmnet, lognet, elnet, pam and pam classification confusion are available.

4 Appendix

4.1 Session information

## R version 4.2.1 (2022-06-23)
## Platform: aarch64-apple-darwin20 (64-bit)
## Running under: macOS Ventura 13.0
## 
## Matrix products: default
## BLAS:   /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib
## 
## locale:
## [1] C/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] a4Reporting_1.46.0
## 
## loaded via a namespace (and not attached):
##  [1] digest_0.6.29   R6_2.5.1        xtable_1.8-4    jsonlite_1.8.0 
##  [5] magrittr_2.0.3  evaluate_0.15   stringi_1.7.8   rlang_1.0.4    
##  [9] cli_3.3.0       jquerylib_0.1.4 bslib_0.3.1     rmarkdown_2.14 
## [13] tools_4.2.1     stringr_1.4.0   xfun_0.31       yaml_2.3.5     
## [17] fastmap_1.1.0   compiler_4.2.1  htmltools_0.5.2 knitr_1.39     
## [21] sass_0.4.1