addCoordinates |
Add coordinates to Object Adds output of Spot Detector coordinates to Seurat object or SCE object created by createSeurat/createSCE. Details about how to use Spot Detector can be found: https://github.com/SpatialTranscriptomicsResearch/st_spot_detector |
createSCE |
Create a SingleCellExperiment Object From Spatial Transcriptomics Data |
createSeurat |
Create a Seurat Object From Spatial Transcriptomics Data |
createVisiumSCE |
createVisiumSCE |
markClusterCol |
markClusterCol |
parseImage |
This function parses a HE image to use as the background for plots |
removeSpots |
removeSpots |
runShinySpaniel |
RunShinySpaniel |
selectSpots |
selectSpots |
spanielPlot |
Spatial Transcriptomics Plot |