bam2gr | Pre-process bam files |
candidate.region | Identify candidate regions |
chromosome | Generics associated with pics classes |
chromosome-method | PICS class |
chromosome-method | Generics associated with pics classes |
chromosome-method | picsError class |
chromosome-method | List of PICS objects |
code | Generics associated with pics classes |
code-method | PICS class |
code-method | picsError class |
code-method | List of PICS objects |
delta | Generics associated with pics classes |
delta-method | PICS class |
delta-method | Generics associated with pics classes |
delta-method | picsError class |
delta-method | List of PICS objects |
K | Generics associated with pics classes |
K-method | PICS class |
K-method | picsError class |
K-method | List of PICS objects |
length-method | List of PICS objects |
length-method | Classes and functions to segment the genome in candidate regions |
makeGRangesOutput | Export a PICS object to GRanges |
map | Classes and functions to segment the genome in candidate regions |
map-method | Classes and functions to segment the genome in candidate regions |
maxRange | Generics associated with pics classes |
maxRange-method | PICS class |
maxRange-method | picsError class |
maxRange-method | List of PICS objects |
minRange | Generics associated with pics classes |
minRange-method | PICS class |
minRange-method | picsError class |
minRange-method | List of PICS objects |
mu | Generics associated with pics classes |
mu-method | PICS class |
mu-method | Generics associated with pics classes |
mu-method | picsError class |
mu-method | List of PICS objects |
PICS | Estimation of binding site positions |
pics-class | PICS class |
pics-generics | Generics associated with pics classes |
picsError-class | picsError class |
picsFDR | Estimate the FDR |
picsList-class | List of PICS objects |
plot-FDR | Plot PICS FDR |
plot-method | Plot PICS FDR |
plot-method | Plot methods for PICS objects |
plot-pics | Plot methods for PICS objects |
score | Generics associated with pics classes |
score-method | PICS class |
score-method | Generics associated with pics classes |
score-method | picsError class |
score-method | List of PICS objects |
scoreForward | Generics associated with pics classes |
scoreForward-method | PICS class |
scoreForward-method | Generics associated with pics classes |
scoreForward-method | picsError class |
scoreForward-method | List of PICS objects |
scoreReverse | Generics associated with pics classes |
scoreReverse-method | PICS class |
scoreReverse-method | Generics associated with pics classes |
scoreReverse-method | picsError class |
scoreReverse-method | List of PICS objects |
se | Generics associated with pics classes |
se-method | PICS class |
se-method | Generics associated with pics classes |
se-method | picsError class |
se-method | List of PICS objects |
seF | Generics associated with pics classes |
seF-method | PICS class |
seF-method | Generics associated with pics classes |
seF-method | picsError class |
seF-method | List of PICS objects |
segChrRead | Segmentation of paired-end sequencing data |
segmentPICS | Segment the genome into candidate regions |
segReads | Classes and functions to segment the genome in candidate regions |
segReads-class | Classes and functions to segment the genome in candidate regions |
segReadsGeneric | Perform genome segmentation depending |
segReadsList | Classes and functions to segment the genome in candidate regions |
segReadsList-class | Classes and functions to segment the genome in candidate regions |
segReadsListPE | Class and methods for list of candidate regions from paired-end data |
segReadsListPE-class | Class and methods for list of candidate regions from paired-end data |
segReadsPE | Classe and methods for candidate regions from paired-end data |
segReadsPE-class | Classe and methods for candidate regions from paired-end data |
seR | Generics associated with pics classes |
seR-method | PICS class |
seR-method | Generics associated with pics classes |
seR-method | picsError class |
seR-method | List of PICS objects |
setParaEM | List of parameters for the EM algorithm that can be used as an argument of PICS. |
setParaPrior | List of parameters that can be used as an argument of PICS. |
show-method | PICS class |
show-method | picsError class |
show-method | List of PICS objects |
show-method | Classes and functions to segment the genome in candidate regions |
sigmaSqF | Generics associated with pics classes |
sigmaSqF-method | PICS class |
sigmaSqF-method | Generics associated with pics classes |
sigmaSqF-method | picsError class |
sigmaSqF-method | List of PICS objects |
sigmaSqR | Generics associated with pics classes |
sigmaSqR-method | PICS class |
sigmaSqR-method | Generics associated with pics classes |
sigmaSqR-method | picsError class |
sigmaSqR-method | List of PICS objects |
summary-method | PICS class |
summary-method | List of PICS objects |
summary-method | Classes and functions to segment the genome in candidate regions |
summarySeg | Summarize segmentList objects |
w | Generics associated with pics classes |
w-method | PICS class |
w-method | picsError class |
w-method | List of PICS objects |
[-method | List of PICS objects |
[-method | Classes and functions to segment the genome in candidate regions |
[-method | Class and methods for list of candidate regions from paired-end data |
[[-method | List of PICS objects |
[[-method | Classes and functions to segment the genome in candidate regions |
[[-method | Class and methods for list of candidate regions from paired-end data |