Implementation of MultiDataSet and ResultSet


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Documentation for package ‘MultiDataSet’ version 1.26.0

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add_eset Method to add an 'eSet' to 'MultiDataSet'.
add_eset-method MultiDataSet instances
add_genexp Method to add an expression microarray dataset to 'MultiDataSet'.
add_genexp-method MultiDataSet instances
add_methy Method to add a slot of methylation to 'MultiDataSet'.
add_methy-method MultiDataSet instances
add_rnaseq Method to add an expression RNA seq dataset to 'MultiDataSet'.
add_rnaseq-method MultiDataSet instances
add_rse Method to add a 'RangedSummarizedExperiment' to 'MultiDataSet'.
add_rse-method MultiDataSet instances
add_se Method to add a 'SummarizedExperiment' to 'MultiDataSet'.
add_se-method MultiDataSet instances
add_snps Method to add a slot of SNPs to 'MultiDataSet'.
add_snps-method MultiDataSet instances
add_table Method to add a 'matrix' to 'MultiDataSet'.
add_table-method MultiDataSet instances
as.list MultiDataSet instances
as.list-method MultiDataSet instances
assayData MultiDataSet instances
assayData-method MultiDataSet instances
chrNumToChar Convert chr numbers to chr strings
commonIds Get the name of the ids common to all datasets
commonIds-method MultiDataSet instances
commonSamples Method to select samples that are present in all datasets.
commonSamples-method MultiDataSet instances
createMultiDataSet MultiDataSet instances
create_resultset Class ResultSet
dims MultiDataSet instances
dims-method MultiDataSet instances
fData MultiDataSet instances
fData-method MultiDataSet instances
fData-method Class ResultSet
featureData MultiDataSet instances
featureData-method MultiDataSet instances
getAssociation Method to extrat feature result from a ResultSet
getAssociation-method Class ResultSet
lambdaClayton Lambda Calculation for a vector of P-Values
length MultiDataSet instances
length-method MultiDataSet instances
length-method Class ResultSet
mae2mds Convert a 'MultiAssayExperiment' to a 'MultiDataSet'
mds2mae Convert a 'MultiDataSet' to a 'MultiAssayExperiment'
MultiDataSet MultiDataSet: Implementation of the BRGE's basic classes
MultiDataSet-class MultiDataSet instances
MultiDataSet-methods MultiDataSet instances
MultiDataSet-methods, MultiDataSet instances
names MultiDataSet instances
names-method MultiDataSet instances
names-method Class ResultSet
ncol MultiDataSet instances
ncol-method MultiDataSet instances
nrow MultiDataSet instances
nrow-method MultiDataSet instances
opt Method to get the options sued to create the ResultSet
opt-method Class ResultSet
pData MultiDataSet instances
pData-method MultiDataSet instances
phenoData MultiDataSet instances
phenoData-method MultiDataSet instances
plot-method Class ResultSet
qq_plot Function to draw a QQ Plot from a vector of numbers
ResultSet Class ResultSet
ResultSet-class Class ResultSet
ResultSet-methods Class ResultSet
rowRanges MultiDataSet instances
rowRanges-method MultiDataSet instances
rowRangesElements Get the name of the datasets that have rowRanges
rowRangesElements-method MultiDataSet instances
rset Example 'ResultSet'
sampleNames-method MultiDataSet instances
subset-method MultiDataSet instances
varLabels-method Class ResultSet
volcano_plot Function to draw a Volcano Plot
w_iclusterplus Apply iClusterPlus clustering method to a MultiDataSet object
w_iclusterplus-method MultiDataSet instances
w_mcia Apply mcia integration method to a MultiDataSet object
w_mcia-method MultiDataSet instances
[ MultiDataSet instances
[-method MultiDataSet instances
[[-method MultiDataSet instances