Genotype Imputed Gene Set Enrichment Analysis


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Documentation for package ‘GIGSEA’ version 1.16.0

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dataframe2geneSet dataframe2geneSet
geneSet2Net geneSet2Net
geneSet2sparseMatrix geneSet2sparseMatrix
gmt2geneSet gmt2geneSet
heart.metaXcan heart.metaXcan
matrixPval matrixPval
MSigDB.KEGG.Pathway MSigDB.KEGG.Pathway
MSigDB.miRNA MSigDB.miRNA
MSigDB.TF MSigDB.TF
orderedIntersect orderedIntersect
permutationMultipleLm permutationMultipleLm
permutationMultipleLmMatrix permutationMultipleLmMatrix
permutationSimpleLm permutationSimpleLm
permutationSimpleLmMatrix permutationSimpleLmMatrix
runGIGSEA runGIGSEA
TargetScan.miRNA TargetScan.miRNA
weightedGSEA weightedGSEA
weightedMultipleLm weightedMultipleLm
weightedPearsonCorr weightedPearsonCorr