basicLimma | Linear models Using limma |
boxplotMicroRna | Boxplot |
cvArray | Coefficient of variation of replicated probes within array |
dd.micro | data example (uRNAList) |
ddPROC | Processed miRNA data (uRNAList) |
dim.uRNAList | Retrieve the Dimensions of an uRNAList Object |
dimnames.uRNAList | Retrieve the Dimension Names of an uRNAList Object |
dimnames<-.uRNAList | Retrieve the Dimension Names of an uRNAList Object |
esetMicroRna | ExpressionSet object from a uRNAList |
filterMicroRna | Filtering Genes |
getDecideTests | Differential expression analysis an multiplicity of the tests |
HeatMapMicroRna | HeatMap |
hierclusMicroRna | Hierarchical clustering |
length.uRNAList | Retrieve the Dimensions of an uRNAList Object |
mvaBASIC | MVA plot |
mvaMicroRna | MA plot |
PCAplotMicroRna | PCA plot |
plotDensityMicroRna | Density Plots of Intensity Signals |
pvalHistogram | Histogram of the p values |
qcPlots | Plots for Quality Assessment |
readMicroRnaAFE | Read Agilent Feature Extraction txt data files |
readTargets | read the target file |
RleMicroRna | Relative Log Expression |
rmaMicroRna | Getting the Total Gene Signal by RMA algorithm |
show-method | uRNAList - class |
significantMicroRna | Summarize Differential Expression Results |
summary.uRNAList | Summaries of Microarray Data Objects |
targets.micro | Example of target file |
tgsMicroRna | Getting the Total Gene Signal |
tgsNormalization | Normalization Between Arrays |
uRNAList-class | uRNAList - class |
writeEset | Writes the expression data matrix of an ExpressionSet object in a txt file |