BSgenome.Dmelanogaster.UCSC.dm3

DOI: 10.18129/B9.bioc.BSgenome.Dmelanogaster.UCSC.dm3    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Dmelanogaster.UCSC.dm3.

Full genome sequences for Drosophila melanogaster (UCSC version dm3)

Bioconductor version: 3.15

Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm3, Apr. 2006) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Dmelanogaster.UCSC.dm3")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Dmelanogaster.UCSC.dm3")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, BSgenome, Drosophila_melanogaster, Genetics
Version 1.4.0
License Artistic-2.0
Depends BSgenome(>= 1.33.5)
Imports BSgenome
LinkingTo
Suggests TxDb.Dmelanogaster.UCSC.dm3.ensGene
SystemRequirements
Enhances
URL
Depends On Me BSgenome.Dmelanogaster.UCSC.dm3.masked
Imports Me BSgenome.Dmelanogaster.UCSC.dm3.masked
Suggests Me Biostrings, ChIPanalyser, easyRNASeq, GenomicAlignments, GenomicFeatures, gmapR, memes, PWMEnrich
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Dmelanogaster.UCSC.dm3_1.4.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Package Short Url https://bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/
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