## ---- echo = FALSE,hide=TRUE, message=FALSE, warning=FALSE-------------------- library(ELMER) library(DT) library(dplyr) library(BiocStyle) ## ----results='hide', eval=TRUE, fig.height=6,fig.cap="The plot shows the Odds Ratio (x axis) for the selected motifs with OR above 1.3 and lower boundary of OR above 1.3. The range shows the 95% confidence interval for each Odds Ratio."---- motif.enrichment.plot(motif.enrichment = "result/getMotif.hypo.motif.enrichment.csv", significant = list(OR = 1.5,lowerOR = 1.3), label = "hypo", save = FALSE) ## ----results='hide', eval=TRUE, fig.height=10,fig.cap="The plot shows the Odds Ratio (x axis) for the selected motifs with OR above 1.3 and lower boundary of OR above 1.3. The range shows the 95% confidence interval for each Odds Ratio."---- motif.enrichment.plot(motif.enrichment = "result/getMotif.hypo.motif.enrichment.csv", significant = list(OR = 1.5,lowerOR = 1.3), label = "hypo", summary = TRUE, save = FALSE)