Changes 1.7.2 + internal updates to PLS + some PLS charts have been renamed for consistency with other methods Changes 1.6.1 + hotfix vector_norm now correctly normalises samples to length 1 + added vector_norm_tests Changes 1.5.7 + improve NA handling in fold_change computations Changes 1.5.5 + change t-test outputs to data.frame + fix NA bug in feature_boxplot chart + use new ontology system in place of stato Changes 1.4.2 + fix fold change threshold using median (#56) + HSD param "unbalanced" is no longer ignored Changes 1.5.2 + add outputs to auto-generated documentation + fix fold change threshold using median (#56) + add fold change using means (#57) + HSD param "unbalanced" is no longer ignored Changes 1.5.1 + fixed broken paired tests Changes 1.4.1 + fixed broken paired tests Changes 1.4.0 + added VIP summary chart + add ellipse plotting options to pca_scores_plot + mv_sample_filter can be used in train/predict mode + Documentation updates + Minor issue fixes + Add median method for fold change + Update PQN with new inputs/outputs due to changes in pmp package + Update SBC with new inputs/outputs due to changes in pmp package + Update MTBLS79 due to changes in SBC Changes 1.1.2 + Documentation updates + Bug fixes Changes 1.0.1 + Fix HCA bug Changes 1.0.0 + Bioconductor 3.11 release Changes 0.99.10 + add Metabolmics BiocView + fix missing sections at end of vignette Changes 0.99.9 + add proteomics vignette + add mean_of_medians + merge all vignettes + fix bug in kfold_xval_grid Changes 0.99.8 + added stratified splitting (stratified_split) + added Gastric Cancer vignette + add AUC metric + add predicted and ROC plots for PLSDA Changes 0.99.7 + minor documentation updates Changes 0.99.6 + fix issues using class() due to changes in R 4.0.0 Changes 0.99.5 + fix dimnames mismatch for knn-impute + add additional vignettes Changes 0.99.4 + Add SVM, nroot transform, constant sum norm + Add funtionality to autoscaling + Fix some issues with permutation testing of model sequences + Add option to impute by samples to knn + Add custom feature labels option to pca loadings Changes 0.99.3 + Fix dimnames mismatch errors + Updated struct depency to 0.99.5 Changes 0.99.2 + renamed some charts containing .'s to use underscores + renamed sbcms dataset to MTBLS79 Changes 0.99.1 + minor updates to pass Bioconductor checks Changes 0.99.0 + use new struct v0.99.4 class constructor functions Release 0.8.4 + Final working version befor bioconductor updates Changes in version 0.4.0 (2019-07-25) + Minor bug fixes + Added tsne method + Added sbcms dataset + Added methods related to signal/batch correction