Changes in Version 1.3.3 (2022-02-04) ===================================== * Converted to using `BiocFileCache` for storing aliases and peptide libraries. Changes in Version 1.3.2 (2022-02-02) ===================================== * Corrected typo in sample name error. * Changed `paste0()` calls to `file.path()` calls. Changes in version 1.1.2 (2021-08-05) ===================================== * Added `propReads()` function to calculate the proportion of sample reads pulled by each peptide. * Added coercion function to convert a `PhIPData` object to a `DataFrame` (and consequently also `data.frames` and `tibbles`). * Changed the storage of alias, library, and beads-only indicators to package environment variables rather than global variables. Changes in version 0.99.0 (2021-02-17) ===================================== * Submitted to Bioconductor