made4

DOI: 10.18129/B9.bioc.made4    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see made4.

Multivariate analysis of microarray data using ADE4

Bioconductor version: 3.15

Multivariate data analysis and graphical display of microarray data. Functions include for supervised dimension reduction (between group analysis) and joint dimension reduction of 2 datasets (coinertia analysis). It contains functions that require R package ade4.

Author: Aedin Culhane

Maintainer: Aedin Culhane <Aedin at jimmy.harvard.edu>

Citation (from within R, enter citation("made4")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("made4")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("made4")

 

HTML R Script Authoring R Markdown vignettes
PDF   Reference Manual

Details

biocViews Classification, Clustering, DimensionReduction, GeneExpression, Microarray, MultipleComparison, PrincipalComponent, Sequencing, Software, Transcriptomics
Version 1.70.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 17.5 years)
License Artistic-2.0
Depends RColorBrewer, gplots, scatterplot3d, Biobase, SummarizedExperiment
Imports ade4
LinkingTo
Suggests affy, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL http://www.hsph.harvard.edu/aedin-culhane/
Depends On Me
Imports Me deco, omicade4
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package made4_1.70.0.tar.gz
Windows Binary made4_1.70.0.zip
macOS Binary (x86_64) made4_1.70.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/made4
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/made4
Package Short Url https://bioconductor.org/packages/made4/
Package Downloads Report Download Stats

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