maPredictDSC

DOI: 10.18129/B9.bioc.maPredictDSC    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see maPredictDSC.

Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature Challenge

Bioconductor version: 3.15

This package implements the classification pipeline of the best overall team (Team221) in the IMPROVER Diagnostic Signature Challenge. Additional functionality is added to compare 27 combinations of data preprocessing, feature selection and classifier types.

Author: Adi Laurentiu Tarca <atarca at med.wayne.edu>

Maintainer: Adi Laurentiu Tarca <atarca at med.wayne.edu>

Citation (from within R, enter citation("maPredictDSC")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("maPredictDSC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("maPredictDSC")

 

PDF R Script maPredictDSC
PDF   Reference Manual

Details

biocViews Classification, Microarray, Software
Version 1.34.0
In Bioconductor since BioC 2.13 (R-3.0) (9 years)
License GPL-2
Depends R (>= 2.15.0), MASS, affy, limma, gcrma, ROC, class, e1071, caret, hgu133plus2.db, ROCR, AnnotationDbi, LungCancerACvsSCCGEO
Imports
LinkingTo
Suggests parallel
SystemRequirements
Enhances
URL http://bioinformaticsprb.med.wayne.edu/maPredictDSC
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package maPredictDSC_1.34.0.tar.gz
Windows Binary maPredictDSC_1.34.0.zip
macOS Binary (x86_64) maPredictDSC_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/maPredictDSC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/maPredictDSC
Package Short Url https://bioconductor.org/packages/maPredictDSC/
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