DOI: 10.18129/B9.bioc.genphen    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see genphen.

genphen: tool for quantification of genotype-phenotype associations in genome wide association studies (GWAS)

Bioconductor version: 3.15

Genetic association studies help us discover relationships between genotypes and phenotype. genphen is a computational tool for quantification of genotype-phenotype associations using a hybrid approach based on statistical learning techniques and probabilistic models that are analyzed computationally by Bayes inference.

Author: Simo Kitanovski [aut, cre]

Maintainer: Simo Kitanovski <simo.kitanovski at>

Citation (from within R, enter citation("genphen")):


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PDF R Script genphen overview
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biocViews Bayesian, Classification, FeatureExtraction, Genetics, GenomeWideAssociation, Regression, SequenceMatching, Sequencing, Software, SupportVectorMachine
Version 1.24.0
In Bioconductor since BioC 3.3 (R-3.3) (6.5 years)
License GPL (>= 2)
Depends R (>= 3.5.0), Rcpp (>= 0.12.17), methods, stats, graphics
Imports rstan (>= 2.17.3), ranger, parallel, foreach, doParallel, e1071, Biostrings, rPref
Suggests testthat, ggplot2, gridExtra, ape, ggrepel, knitr, reshape, xtable
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