crisprseekplus

DOI: 10.18129/B9.bioc.crisprseekplus    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see crisprseekplus.

crisprseekplus

Bioconductor version: 3.15

Bioinformatics platform containing interface to work with offTargetAnalysis and compare2Sequences in the CRISPRseek package, and GUIDEseqAnalysis.

Author: Sophie Wigmore <Sophie.Wigmore at umassmed.edu>, Alper Kucukural <alper.kucukural at umassmed.edu>, Lihua Julie Zhu <julie.zhu at umassmed.edu>, Michael Brodsky <Michael.Brodsky at umassmed.edu>, Manuel Garber <Manuel.Garber at umassmed.edu>

Maintainer: Alper Kucukural <alper.kucukural at umassmed.edu>

Citation (from within R, enter citation("crisprseekplus")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("crisprseekplus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("crisprseekplus")

 

HTML R Script DEBrowser Vignette
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews GeneRegulation, SequenceMatching, Software
Version 1.22.0
In Bioconductor since BioC 3.4 (R-3.3) (6 years)
License GPL-3 + file LICENSE
Depends R (>= 3.3.0), shiny, shinyjs, CRISPRseek
Imports DT, utils, GUIDEseq, GenomicRanges, GenomicFeatures, BiocManager, BSgenome, AnnotationDbi, hash
LinkingTo
Suggests testthat, rmarkdown, knitr, R.rsp
SystemRequirements
Enhances
URL https://github.com/UMMS-Biocore/crisprseekplus
BugReports https://github.com/UMMS-Biocore/crisprseekplus/issues/new
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package crisprseekplus_1.22.0.tar.gz
Windows Binary crisprseekplus_1.22.0.zip
macOS Binary (x86_64) crisprseekplus_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/crisprseekplus
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/crisprseekplus
Package Short Url https://bioconductor.org/packages/crisprseekplus/
Package Downloads Report Download Stats

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