biobtreeR

DOI: 10.18129/B9.bioc.biobtreeR    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see biobtreeR.

Using biobtree tool from R

Bioconductor version: 3.15

The biobtreeR package provides an interface to [biobtree](https://github.com/tamerh/biobtree) tool which covers large set of bioinformatics datasets and allows search and chain mappings functionalities.

Author: Tamer Gur

Maintainer: Tamer Gur <tgur at ebi.ac.uk>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biobtreeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biobtreeR")

 

HTML	R Script	The biobtreeR users guide
PDF		Reference Manual
Text		LICENSE

Details

biocViews	Annotation, Software
Version	1.8.0
In Bioconductor since	BioC 3.11 (R-4.0) (2.5 years)
License	MIT + file LICENSE
Depends
Imports	httr, httpuv, stringi, jsonlite, methods, utils
LinkingTo
Suggests	BiocStyle, knitr, testthat, rmarkdown, markdown
SystemRequirements
Enhances
URL	https://github.com/tamerh/biobtreeR
BugReports	https://github.com/tamerh/biobtreeR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	biobtreeR_1.8.0.tar.gz
Windows Binary	biobtreeR_1.8.0.zip
macOS Binary (x86_64)	biobtreeR_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/biobtreeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/biobtreeR
Package Short Url	https://bioconductor.org/packages/biobtreeR/
Package Downloads Report	Download Stats