SISPA

DOI: 10.18129/B9.bioc.SISPA    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see SISPA.

SISPA: Method for Sample Integrated Set Profile Analysis

Bioconductor version: 3.15

Sample Integrated Set Profile Analysis (SISPA) is a method designed to define sample groups with similar gene set enrichment profiles.

Author: Bhakti Dwivedi and Jeanne Kowalski

Maintainer: Bhakti Dwivedi <bhakti.dwivedi at emory.edu>

Citation (from within R, enter citation("SISPA")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SISPA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SISPA")

 

HTML R Script SISPA:Method for Sample Integrated Set Profile Analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneSetEnrichment, GenomeWideAssociation, Software
Version 1.26.0
In Bioconductor since BioC 3.2 (R-3.2) (7 years)
License GPL-2
Depends R (>= 3.5), genefilter, GSVA, changepoint
Imports data.table, plyr, ggplot2
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SISPA_1.26.0.tar.gz
Windows Binary SISPA_1.26.0.zip (64-bit only)
macOS Binary (x86_64) SISPA_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SISPA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SISPA
Package Short Url https://bioconductor.org/packages/SISPA/
Package Downloads Report Download Stats

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