DOI: 10.18129/B9.bioc.SIMAT    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see SIMAT.

GC-SIM-MS data processing and alaysis tool

Bioconductor version: 3.15

This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.

Author: M. R. Nezami Ranjbar <nranjbar at>

Maintainer: M. R. Nezami Ranjbar <nranjbar at>

Citation (from within R, enter citation("SIMAT")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script SIMAT Usage
PDF   Reference Manual
Text   NEWS


biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version 1.28.0
In Bioconductor since BioC 3.1 (R-3.2) (7.5 years)
License GPL-2
Depends R (>= 3.5.0), Rcpp (>= 0.11.3)
Imports mzR, ggplot2, grid, reshape2, grDevices, stats, utils
Suggests RUnit, BiocGenerics
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package SIMAT_1.28.0.tar.gz
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