DOI: 10.18129/B9.bioc.RTNduals    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see RTNduals.

Analysis of co-regulation and inference of 'dual regulons'

Bioconductor version: 3.15

RTNduals is a tool that searches for possible co-regulatory loops between regulon pairs generated by the RTN package. It compares the shared targets in order to infer 'dual regulons', a new concept that tests whether regulators can co-operate or compete in influencing targets.

Author: Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>, Clarice Groeneveld <clari.groeneveld at gmail.com>

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biocViews GeneExpression, GeneRegulation, GraphAndNetwork, NetworkEnrichment, NetworkInference, Software
Version 1.20.0
In Bioconductor since BioC 3.5 (R-3.4) (5.5 years)
License Artistic-2.0
Depends R (>= 3.6.3), RTN(>= 2.14.1), methods
Imports graphics, grDevices, stats, utils
Suggests knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics
Depends On Me RTNsurvival
Imports Me
Suggests Me
Links To Me
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Source Package RTNduals_1.20.0.tar.gz
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