DOI: 10.18129/B9.bioc.Onassis    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Onassis.

OnASSIs Ontology Annotation and Semantic SImilarity software

Bioconductor version: 3.15

A package that allows the annotation of text with ontology terms (mainly from OBO ontologies) and the computation of semantic similarity measures based on the structure of the ontology between different annotated samples.


Maintainer: Eugenia Galeota <eugenia.galeota at gmail.com>

Citation (from within R, enter citation("Onassis")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Annotation, Clustering, DataImport, GeneTarget, Network, Software
Version 1.18.0
In Bioconductor since BioC 3.6 (R-3.4) (5 years)
License GPL-2
Depends R (>= 4.0), rJava, OnassisJavaLibs
Imports GEOmetadb, RSQLite, data.table, methods, tools, utils, AnnotationDbi, RCurl, stats, DT, data.table, knitr, Rtsne, dendextend, clusteval, ggplot2, ggfortify
Suggests BiocStyle, rmarkdown, htmltools, org.Hs.eg.db, gplots, GenomicRanges, kableExtra
SystemRequirements Java (>= 1.8)
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package
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Source Repository git clone https://git.bioconductor.org/packages/Onassis
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Onassis
Package Short Url https://bioconductor.org/packages/Onassis/
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