DOI: 10.18129/B9.bioc.NanoMethViz    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see NanoMethViz.

Visualise methlation data from Oxford Nanopore sequencing

Bioconductor version: 3.15

NanoMethViz is a toolkit for visualising methylation data from Oxford Nanopore sequencing. It can be used to explore methylation patterns from reads derived from Oxford Nanopore direct DNA sequencing with methylation called by callers including nanopolish, f5c and megalodon. The plots in this package allow the visualisation of methylation profiles aggregated over experimental groups and across classes of genomic features.

Author: Shian Su [cre, aut]

Maintainer: Shian Su <su.s at>

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biocViews DifferentialMethylation, Software, Visualization
Version 2.2.0
In Bioconductor since BioC 3.12 (R-4.0) (2 years)
License Apache License (>= 2.0)
Depends R (>= 4.0.0), methods, ggplot2
Imports cpp11 (>= 0.2.5), readr, S4Vectors, SummarizedExperiment, BiocSingular, bsseq, forcats, assertthat, AnnotationDbi, Rcpp, dplyr, data.table, e1071, fs, GenomicRanges, glue, limma(>= 3.44.0), patchwork, purrr, rlang, RSQLite, Rsamtools, scales, scico, stats, stringr, tibble, tidyr, utils, withr, zlibbioc
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Suggests DSS, Mus.musculus, Homo.sapiens, knitr, rmarkdown, testthat (>= 3.0.0), covr
SystemRequirements C++11
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