DOI: 10.18129/B9.bioc.EpiTxDb    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see EpiTxDb.

Storing and accessing epitranscriptomic information using the AnnotationDbi interface

Bioconductor version: 3.15

EpiTxDb facilitates the storage of epitranscriptomic information. More specifically, it can keep track of modification identity, position, the enzyme for introducing it on the RNA, a specifier which determines the position on the RNA to be modified and the literature references each modification is associated with.

Author: Felix G.M. Ernst [aut, cre]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("EpiTxDb")):


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HTML R Script EpiTxDb
HTML R Script EpiTxDb-creation
PDF   Reference Manual
Text   NEWS


biocViews Epitranscriptomics, Software
Version 1.8.0
In Bioconductor since BioC 3.11 (R-4.0) (2.5 years)
License Artistic-2.0
Depends R (>= 4.0), AnnotationDbi, Modstrings
Imports methods, utils, httr, xml2, curl, GenomicFeatures, GenomicRanges, GenomeInfoDb, BiocGenerics, BiocFileCache, S4Vectors, IRanges, RSQLite, DBI, Biostrings, tRNAdbImport
Suggests BiocStyle, knitr, rmarkdown, testthat, httptest, AnnotationHub, ensembldb, ggplot2, EpiTxDb.Hs.hg38, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Scerevisiae.UCSC.sacCer3, TxDb.Hsapiens.UCSC.hg38.knownGene
URL https://github.com/FelixErnst/EpiTxDb
BugReports https://github.com/FelixErnst/EpiTxDb/issues
Depends On Me EpiTxDb.Hs.hg38, EpiTxDb.Mm.mm10, EpiTxDb.Sc.sacCer3
Imports Me
Suggests Me
Links To Me
Build Report  

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Source Package EpiTxDb_1.8.0.tar.gz
Windows Binary EpiTxDb_1.8.0.zip
macOS Binary (x86_64) EpiTxDb_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/EpiTxDb
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EpiTxDb
Package Short Url https://bioconductor.org/packages/EpiTxDb/
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