DOI: 10.18129/B9.bioc.Autotuner    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Autotuner.

Automated parameter selection for untargeted metabolomics data processing

Bioconductor version: 3.15

This package is designed to help faciliate data processing in untargeted metabolomics. To do this, the algorithm contained within the package performs statistical inference on raw data to come up with the best set of parameters to process the raw data.

Author: Craig McLean

Maintainer: Craig McLean <craigmclean23 at>

Citation (from within R, enter citation("Autotuner")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews MassSpectrometry, Metabolomics, Software
Version 1.10.0
In Bioconductor since BioC 3.10 (R-3.6) (3 years)
License MIT + file LICENSE
Depends R (>= 4.0.0), methods, Biobase, MSnbase(>= 2.14.2)
Imports RColorBrewer, mzR, assertthat, scales, entropy, cluster, grDevices, graphics, stats, utils
Suggests testthat (>= 2.1.0), covr, devtools, knitr, rmarkdown, mtbls2
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