aggregateCHRPlot | Visualization of data output from the tLOHCalc function, aggregated per chromosome |
alleleFrequencyPlot | Visualization of data output from the tLOHCalc function |
cols | Removes outliers |
dataframe | Removes outliers |
humanGBMsampleAC | Imported dataset of a human glioblastoma spatial transcriptomics sample processed with tLOHImportData. |
marginalM1Calc | Calculate marginal of Model 1 |
marginalM2CalcBHET | Calculation of marginal M2 het |
marginalM2CalcBLOH | Marginal M2 Calculation |
newValue | Removes outliers |
removeOutlierFromCalc | Removes outliers |
rows | Removes outliers |
tLOHCalc | Assement of evidence for LOH in clusters from spatial transcriptomics data |
tLOHDataImport | Import VCF for tLOHCalc |