Conducts pathway test of metabolomics data using a weighted permutation test


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Documentation for package ‘metapone’ version 1.2.0

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metapone-package Conducts pathway test of metabolomics data using a weighted permutation test
bbplot1d Plot of metapone result.
bbplot2d Plot of metapone result.
ftable Acessor functions for the feature mapping table in a metaponeResult object.
ftable-method Acessor functions for the feature mapping table in a metaponeResult object.
ftable-method Class "metaponeResult"
hmdbCompMZ the m/z values of common adduct ions of HMDB metaboites
hmdbCompMZ.metapone the m/z values of common adduct ions of metapone metaboites
metapone METAbolic pathway testing using both POsitive and NEgative mode data
metaponeResult Class "metaponeResult"
metaponeResult-class Class "metaponeResult"
metaponeResult-method Class "metaponeResult"
neg Example negative mode data from the Metabolome Atlas of the Aging Mouse Brain
pa Pathway-metabolite match file.
pos Example positive mode data from the Metabolome Atlas of the Aging Mouse Brain
ptable Acessor functions for the test result table in a metaponeResult object.
ptable-method Class "metaponeResult"
ptable-method Acessor functions for the test result table in a metaponeResult object.